Transcriptome v3 Disclamer

These data have been funded and produced by COMAV´s Bioinformatics & Genomics and Cucurbits Breeding groups. This pre-publication data is preliminary and may contain errors and be incomplete. The purpose of this policy is to make available the data to scientific community to facilitate the research on C. pepo.

By accessing these data, you agree not to publish any research containing analyses of genes or transcriptomic data prior to publication of these data by our group.

Interested parties are encouraged to contact us to discuss about their intentions and any potential collaboration. Please, obtain written permission from the cucurbiGene team (contact data listed below) in advance of submitting articles containing data or figures primarily derived from this website prior to our publication.

The data may be freely downloaded and used by all who respect the restrictions in the previous paragraph. While still in waiting period status, the assembly and raw sequence reads should not be redistributed or repackaged without permission from the cucurbiGene team.

Download the C.pepo trancriptome v3 here

Instituto para la Conservación y Mejora de la Agrodiversidad Valenciana (COMAV). Universidad Politécnica de Valencia Ciudad Politécnica de la Innovación (CPI). Edificio 8E - Escalera J, 2º Piso Camino de vera, s/n 46022 Valencia. SPAIN.

Phone number: +34 96 387 7000 Ext. 79415; Fax: +34 96 387 9422.

e-mail: mpicosi@btc.upv.es ,jcanizares@upv.es

Transcriptome v3

Go statistics

Look here.

Trascriptome statistics

Version v3
Assembler Trinity
Date 16/01/2014
Number unigene clusters 73239
Number transcribed clusters 108062
Transcribed clusters with ORFs 65990
Transcribed clusters with cucumber orthologs 29632

Libraries

MU16

Accesion MU16 (Zucchini)
Species: Cucurbita pepo L. ssp. pepo
Tissues Lleaves, flowers and roots
Number sequence 413612, 454 sequences
SRA Number SRR091276.1

UPV196

Accesion UPV196 (Scallop)
Species: Cucurbita pepo L. ssp. pepo
Tissues Lleaves, flowers and roots
Number sequence 399110, 454 sequences
SRA Number SRR091277.1

UPV196

Accesion UPV196 (Scallop)
Species: Cucurbita pepo L. ssp. pepo
Tissues Lleaves, flowers and roots
Number sequence Illumina pair end:111986136 reads

MU16

Accesion MU16 (Zucchini)
Species: Cucurbita pepo L. ssp. pepo
Tissues Lleaves, flowers and roots
Number sequence Illumina pair end: 116484480 reads